
This protein-packed bagel recipe has revolutionized my weekend breakfast routine by turning a traditionally complex baking project into a simple 25-minute affair. The air fryer method creates perfectly golden bagels with a satisfying chew and impressive 10 grams of protein per serving.
I discovered this recipe during a protein challenge month and was shocked at how close these came to traditional bagels without the boiling and long rise times. My family now requests them every Sunday morning.
Ingredients
- 1 cup all purpose flour The backbone of our bagels providing structure. For best results use a kitchen scale to measure accurately
- 2 teaspoons baking powder This creates the rise without needing yeast or proofing time
- Pinch of salt Optional but recommended to enhance the flavor profile
- 1 cup + 2 tablespoons cottage cheese The secret protein source. Choose 2% or 4% for best texture and richness
- 1 egg Optional but creates a beautiful golden crust when used as a wash
- Toppings like everything seasoning poppy seeds or sesame seeds These add texture flavor and visual appeal
Step-by-Step Instructions
- Create the flour base
- Combine flour baking powder and optional salt in a medium bowl ensuring even distribution of the leavening agent throughout the mixture.
- Add cottage cheese
- Form a well in the center of your dry ingredients and add cottage cheese. Mix with a fork or small spatula until a chunky dough forms. The mixture will look slightly shaggy at first but will come together as you work it.
- Knead the dough
- Turn dough onto a well floured surface and knead for 1 2 minutes until it forms a semi smooth ball. Add extra flour as needed if dough becomes sticky. The texture should be slightly tacky but workable.
- Shape the bagels
- Divide dough into 4 equal portions. Roll each portion into a 6 7 inch log approximately 3/4 inch thick then connect the ends to form a circle. Place formed bagels on a lightly floured surface.
- Apply egg wash and toppings
- Whisk egg with a splash of water or milk and brush lightly over bagels. Immediately sprinkle with desired toppings so they adhere to the egg wash.
- Air fry to perfection
- Preheat air fryer to 300°F. Spray basket with cooking spray or line with parchment. Place bagels in a single layer and cook for 15 17 minutes until golden brown checking at the 10 minute mark.
- Cool before serving
- Allow bagels to rest for at least 15 minutes before slicing. This crucial step allows the interior structure to set properly.

The cottage cheese is truly the magic ingredient here. I was initially skeptical about using it in baking but it creates a tender interior while adding significant protein. My daughter who normally dislikes cottage cheese asks for these bagels specifically now!
Storage Solutions
These protein bagels maintain their quality remarkably well when stored properly. Keep them in an airtight container in the refrigerator for up to 5 days. For longer preservation freeze the completely cooled bagels in a freezer safe container or zip bag with parchment between layers to prevent sticking. They maintain quality for up to three months when frozen.
Easy Substitutions
This recipe welcomes many adaptations based on dietary needs or what you have on hand. The all purpose flour can be replaced with whole wheat flour for added fiber or a cup for cup gluten free flour blend for those avoiding gluten. For the cottage cheese try 2% for a lighter option or stick with 4% for maximum richness. Greek yogurt can work in a pinch though the texture will differ slightly. You can also add herbs or spices to the dough itself for flavored bagels.
Topping Inspirations
Transform these simple bagels into gourmet creations with thoughtful toppings. Beyond the classic everything seasoning consider dried minced garlic mixed with sea salt for a rustic flavor. Cinnamon sugar creates a dessert like option perfect with cream cheese. For a Mediterranean twist try za'atar seasoning with a drizzle of olive oil after baking. My personal favorite combination adds a sprinkle of shredded asiago cheese and cracked black pepper during the last 5 minutes of air frying.
Serving Suggestions
While delicious on their own these protein bagels shine when properly paired. Slice and toast them lightly for the perfect canvas for avocado and a sprinkle of red pepper flakes. For a protein packed breakfast sandwich add scrambled eggs turkey bacon and spinach. They also work beautifully as the base for an open faced tuna melt or pizza bagels for lunch. I find they are substantial enough to keep me full through busy mornings without feeling heavy.

Common Questions
- → Can I make these bagels without an air fryer?
Yes! While the air fryer creates a wonderful texture, you can bake these bagels in a conventional oven at 375°F for 20-25 minutes until golden brown.
- → How do I store leftover bagels?
Store bagels in an airtight container in the refrigerator for up to 5 days. For longer storage, freeze in a freezer-safe container for up to 3 months. Defrost overnight in the refrigerator and reheat in the air fryer at 330°F, toaster, or microwave.
- → Can I make these bagels gluten-free?
Absolutely! You can substitute the all-purpose flour with cup-for-cup gluten-free flour with excellent results. The texture may vary slightly but they'll still be delicious.
- → Is the egg wash necessary?
The egg wash helps the toppings stick and gives the bagels a beautiful golden color, but it's optional. If you prefer to skip it, the bagels will still turn out well, just with a slightly different appearance.
- → What type of cottage cheese works best?
Both 2% and 4% cottage cheese work well in this recipe. The higher fat content in 4% will yield slightly richer bagels, but either option produces excellent results.
- → How can I add more flavor variations?
Beyond the suggested toppings (everything seasoning, poppy seeds, sesame seeds), you can mix herbs, spices, or cheese directly into the dough. Try adding cinnamon and raisins for a sweet version, or herbs and shredded cheese for savory bagels.